Abstract Dynamic control of thermal transport in solid materials is highly desired for thermal management technology. However, the development of a material exhibiting large modulation of thermal conductivity (?) by external stimuli remains a major challenge. Here, the large ? modulation is reported by the reversible 3D to 2D crystal structure transition in a nonequilibrium solid solution of (Pb1?xSnx)Se, where Pb2+ stabilizes a 3D cubic structure while Sn2+ does a 2D layered structure. The phase boundary of these phases is induced in (Pb0.5Sn0.5)Se bulk polycrystals by thermally quenching the high-temperature solid solution phase. Through the 3D?2D phase transition, the 1/2.9-times decrease of lattice ? (?lat.) is achieved by strong phonon scattering in the 2D layered structure, and the electronic ? (?ele.) is also decreased by 5 orders of magnitude due to the electronic phase transition from a 3D high conductivity state to a 2D semiconducting state. The total ? (=?lat. + ?ele.) modulation ratio ?3D phase/?2D phase = 3.6 is attained at 373 K. The present strategy will lead to a novel concept for designing thermal management materials through crystal-structure dimensionality switch using nonequilibrium phase boundaries.